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SRX033259: Whole Exome sequencing for the 1000 Genomes Project
120 ILLUMINA (Illumina HiSeq 2000) runs: 115.3M spots, 16.6G bases, 9.6Gb downloads

Design: Whole Exome sequencing for the 1000 Genomes Project via in-solution hybrid selection
Submitted by: Broad Institute (BI)
Study: Exome sequencing of (CLM) Colombia from Medellin, Colombia HapMap population
PRJNA60133 • SRP004070 • All experiments • All runs
Samples: pool of 15 samples • Homo sapiens
Library:
Name: Solexa-42316
Instrument: Illumina HiSeq 2000
Strategy: WXS
Source: GENOMIC
Selection: Hybrid Selection
Layout: PAIRED
Spot descriptor:
1  forward barcode77  reverse

Experiment attributes: (show all 6 attributes...) (hide...)
EXPECTED_BASECALL_TABLE: match_edge="full" max_mismatch="1" min_match="7" r (show full text...)(hide...)
match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_934" member_name="tagged_934_TTAATCAG" TTAATCAG match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_534" member_name="tagged_534_CTGCGGAT" CTGCGGAT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_635" member_name="tagged_635_GCAGCCGT" GCAGCCGT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_293" member_name="tagged_293_ATTCTAGG" ATTCTAGG match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_289" member_name="tagged_289_ATTATGTT" ATTATGTT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_800" member_name="tagged_800_TACTTAGC" TACTTAGC match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_924" member_name="tagged_924_TGTAATCA" TGTAATCA match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_220" member_name="tagged_220_AGGTCGCA" AGGTCGCA match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_422" member_name="tagged_422_CCTACCAT" CCTACCAT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_747" member_name="tagged_747_GTCCACAG" GTCCACAG match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_509" member_name="tagged_509_CTATGCGT" CTATGCGT match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_288" member_name="tagged_288_ATTATCAA" ATTATCAA match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_938" member_name="tagged_938_TTACGCAC" TTACGCAC match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_754" member_name="tagged_754_GTCTGATG" GTCTGATG match_edge="full" max_mismatch="1" min_match="7" read_group_tag="tagged_498" member_name="tagged_498_CGTTACCA" CGTTACCA
5 BI attributes: (show...)(hide...)
BI GSSR sample IDs: 65652.0, 65653.0, 65654.0, 65655.0, 65656.0, 65657.0, 65658.0, 65659.0, 65660.0, 65661.0, 65662.0, 65663.0, 65664.0, 65665.0, 65666.0
BI GSSR sample LSIDs: broadinstitute.org:bsp.prod.sample:1D9W7, broadinstitute.org:bsp.prod.sample:1D9W8, broadinstitute.org:bsp.prod.sample:1D9W9, broadinstitute.org:bsp.prod.sample:1D9WA, broadinstitute.org:bsp.prod.sample:1D9WB, broadinstitute.org:bsp.prod.sample:1D9WC, broadinstitute.org:bsp.prod.sample:1D9WD, broadinstitute.org:bsp.prod.sample:1D9WE, broadinstitute.org:bsp.prod.sample:1D9WF, broadinstitute.org:bsp.prod.sample:1D9WG, broadinstitute.org:bsp.prod.sample:1D9WH, broadinstitute.org:bsp.prod.sample:1D9WI, broadinstitute.org:bsp.prod.sample:1D9WJ, broadinstitute.org:bsp.prod.sample:1D9WK, broadinstitute.org:bsp.prod.sample:1D9WL
BI project name: C460
BI target set: whole_exome_agilent_1.1_refseq_plus_3_boosters
BI work request ID: 23276
Runs: 120 runs, 115.3M spots, 16.6G bases, 9.6Gb
Run# of Spots# of BasesSizePublished
SRR079106861,997124.1M71.4Mb2010-12-14
SRR079111872,898125.7M71.8Mb2010-12-14
SRR079146911,103131.2M78.7Mb2010-12-14
SRR079155920,764132.6M75.7Mb2010-12-14
SRR079157836,374120.4M69.1Mb2010-12-14
SRR079160933,525134.4M80Mb2010-12-14
SRR079176917,228132.1M78.8Mb2010-12-14
SRR079179979,569141.1M84.4Mb2010-12-14
SRR0791881,083,707156.1M92.5Mb2010-12-14
SRR079189991,781142.8M84.8Mb2010-12-14
SRR0791951,096,611157.9M95.4Mb2010-12-14
SRR079196952,956137.2M79.9Mb2010-12-14
SRR079210869,644125.2M75.2Mb2010-12-14
SRR0792151,031,310148.5M87.8Mb2010-12-14
SRR079230989,449142.5M84.9Mb2010-12-14
There are 105 omitted runs. See all runs in Run Selector.

#Member# of Spots# of Bases
1SRS074262 : tagged_293_ATTCTAGG8.5M1.2G
2SRS074263 : tagged_747_GTCCACAG7.1M1G
3SRS074271 : tagged_938_TTACGCAC7.3M1.1G
4SRS074283 : tagged_220_AGGTCGCA8.6M1.2G
5SRS074284 : tagged_924_TGTAATCA7.2M1G
6SRS074286 : tagged_934_TTAATCAG6.5M931.4M
7SRS074287 : tagged_498_CGTTACCA7.7M1.1G
8SRS074292 : tagged_800_TACTTAGC7.5M1.1G
9SRS074293 : tagged_534_CTGCGGAT7.7M1.1G
10SRS074295 : tagged_422_CCTACCAT8.2M1.2G
11SRS074296 : tagged_289_ATTATGTT7.6M1.1G
12SRS074298 : tagged_754_GTCTGATG6.8M982.6M
13SRS074299 : tagged_288_ATTATCAA8M1.1G
14SRS074301 : tagged_509_CTATGCGT7.8M1.1G
15SRS074302 : tagged_635_GCAGCCGT8.8M1.3G
16 : defaultn/an/a

ID:
40203

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